What’s New
- 新型冠状病毒感染的肺炎诊疗方案知识图谱
- Health Knowledge Graph for Novel Coronavirus Pneumonia (Covid-19)
- New Crown Health Knowledge Graph
Contents
Researchers
Organizations
- World Health Organization(WHO)
- Ontotext
- National Library of Medicine(NLM)
- OpenEHR
- Digital Imaging and Communications in Medicine(Dicom)
- National Institutes of Health(NIH)
- Mayoclinic
- MD Anderson Cancer Center
Conferences and Journals
- American College of Cardiology(ACC)
- American Heart Association(AHA)
- Bioinformatics and Biomedicine(BIBM)
- European Society of Cardiology(ESC)
- Journal of Biomedical Informatics(JBI)
- Health Information Science(HIS)
- International Conference on Smart Health(ICSH)
- Intelligent Platform Management Interface(IPMI)
- International Symposium on Biomedical Imaging(ISBI)
- Transactions on Medical Imaging(TMI)
- Medical Image Computing and Computer Assisted Intervention(MICCAI)
- Nature
- Science
Toolkits
Health Data Management
- ERPNext - ERPNext Healthcare modules helps you manage patients, appointments, consultations and lab tests along with billing
- GNU Health - Electronic Medical Record, Hospital Management, and Health Information System.
- MedinTux - French Medical Practice Management System.
- Open cancer - Cancer data management.
- OpenEMR - Electronic Health Records and Medical Practice Management application.
Health Data Analysis
- Archie - OpenEHR Library written in Java
- Asymmetrik FHIR API Server - A Secure Rest implementation for the HL7 FHIR Specification
- DCMTK - DICOM Toolkit
- dicom - High Performance DICOM Medical Image Parser in Go
- Evil-DICOM - A C# DICOM Library
- Fellow Oak DICOM - DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono and Unity
- FHIR .NET API - The official .NET API for HL7 FHIR.
- fhir.js - JavaScript client for FHIR.
- FHIR protocol buffers - a Google implementation of protocol buffers for FHIR.
- HAPI FHIR - Java API for HL7 FHIR Clients and Servers.
- Hearth - A fast FHIR-compliant server focused on longitudinal data stores.
- Health data standards - Ruby library for generating and consuming various healthcare related formats. These include HITSP C32, QRDA Category I, and QRDA Category III.
- MITK - The Medical Imaging Interaction Toolkit.
- Node HL7 - Node module that is bridged with the Java Hapi HL7 library.
- Node-hl7-parser - Open source version of Redox’s HL7 v2 to schema-fied JSON parser.
- php-fhir - Tools for creating PHP classes from the HL7 FHIR Specification
- pynetdicom - A Python implementation of the DICOM networking protocol
- Python HL7 - Simple library for parsing messages of HL7 version 2.x into Python objects.
- Python SMART on FHIR client - Flexible Python client for FHIR servers supporting the SMART on FHIR protocol
- Ruby FHIR - FHIR client implementation in Ruby.
- Ruby HL7 - Ruby HL7 library.
- OpenNRE - An open-source and extensible toolkit to implement relation extraction models.
- Sift - Knowledge extraction from web data - sift is a toolkit for extracting models of entities and text from a corpus of linked documents.
- Open-entity-relation-extraction - Knowledge triples extraction (entities and relations extraction) and knowledge base construction.
- Standford CoreNLP - A set of human language technology tools.
- NLTK - A leading platform for building Python programs to work with human language data.
- OpenCGG - A system for parsing and generating text.
- IEPY - IEPY is an open source tool for Information Extraction focused on Relation Extraction.
Applications
- Bahmni - Hospital system.
- Cottage Med - Electronic Medical Record software designed by physicians.
- EHRServer - CaboLabs EHRServer
- GNUmed - Electronic Medical Record software.
- EHRServer - Generic, minimal, standards-based, service-oriented, openEHR clinical data storage.
- FreeHealth EHR - Electronic Health Record software.
- FreeMedForms EMR - Electronic Medical Record software.
-
Health QA - A QA system framework for special desease.
- HospitalRun - HospitalRun is built to provide the most modern Hospital Information System possible to the least resourced environments.
- Hospital OS - Thai Hospital Information System.
- HOSxP - Thai Hospital Information System that aims to ease the healthcare workflow of health centers and central hospitals.
- LibreHealth EHR - Clinically-focused Electronic Health Record System.
- Odoo Medical - Universal Health and Hospital Information System.
- OpenClinic - Medical Records System.
- OpenEyes - Electronic Medical Record application for ophthalmology.
- Open Hospital - Electronic Medical Record software for underprivileged rural hospitals.
- openMAXIMS - Full Patient Administration System designed for the NHS.
- OpenMRS - Enterprise Electronic Medical Record System platform.
- OSCAR EMR - OSCAR McMaster Project
-
QA System on Medical Knowledge Graph - A tutorial and implement of disease centered Medical knowledge graph and qa system based on it.
- Ripple - NHS funded community led initiative towards an integrated Digital Care Record Platform.
- VistA - Health Information Technology System.
Data and Knowledge Bases
Datasets
- EchoNet-Dynamic - A Large New Cardiac Motion Video Data Resource
- The National Library of Medicine presents MedPix® - Database of 53,000 medical images from 13,000 patients with annotations.
- CT Colongraphy for Colon Cancer - CT scan for diagnosing of colon cancer.
- Digital Retinal Images for Vessel Extraction - The DRIVE database is for comparative studies on segmentation of blood vessels in retinal images.
-
EtherCIS - Enterprise Clinical Data Repository
- Isic Archive - Melanoma - This archive contains 23k images of classified skin lesions. It contains both malignant and benign examples.
- TCIA Collections - Cancer imaging data sets across various cancer types
- MIMIC-III - A freely accessible critical care database.
Knowledge Bases
- Gene Ontology - The Gene Ontology (GO) knowledgebase is the world’s largest source of information on the functions of genes.
- Health information technology(Health IT) - Health IT includes the use of electronic health records (EHRs) instead of paper medical records.
- Linked Life Data - Linked Life Data is a data-as-a-service platform that provides access to 25 public biomedical databases through a single access point.
- Unified Medical Language System(UMLS) - A set of files and software that brings together many health and biomedical vocabularies and standards
- National Center for Biotechnology Information(NCBI) - NCBI creates a variety of educational products including courses, workshops, webinars, training materials and documentation.
- Knowledge Graph for Traditional Chinese Medicine
- Knowledge Graph of Breast Cancer(KGBC)
- Knowledge graph of New Coronavirus